Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm9229-201ENSMUST00000222777 126 ntBASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc28aQ8CEI3 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Gm15393-201ENSMUST00000120499 219 ntBASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 AC137842.1-201ENSMUST00000227896 2064 ntBASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc28aQ8CEI3 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gm28630-201ENSMUST00000187806 498 ntBASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc28aQ8CEI3 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms