Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm18244-201ENSMUST00000219747 1566 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm6203-201ENSMUST00000209575 1342 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm10327-201ENSMUST00000105222 1002 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm7809-201ENSMUST00000153199 742 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Gm43822-201ENSMUST00000200285 476 ntBASIC18.35■□□□□ 0.53
Usp40Q8BWR4 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp40Q8BWR4 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 AC159649.2-201ENSMUST00000222984 3223 ntBASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm8793-201ENSMUST00000183069 1303 ntBASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm5896-201ENSMUST00000189662 1024 ntBASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Usp40Q8BWR4 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp40Q8BWR4 Gm13786-201ENSMUST00000122371 333 ntBASIC18.33■□□□□ 0.52
Usp40Q8BWR4 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gm26185-201ENSMUST00000157692 266 ntBASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gm7584-201ENSMUST00000175829 940 ntBASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gm38266-201ENSMUST00000194931 421 ntBASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp40Q8BWR4 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm12626-201ENSMUST00000117339 1983 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm12623-201ENSMUST00000119849 1983 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms