Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gm23984-201ENSMUST00000157139 203 ntBASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gm6745-201ENSMUST00000199216 526 ntBASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sh3rf1Q69ZI1 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Gm9522-201ENSMUST00000182394 926 ntBASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Gm7390-201ENSMUST00000212452 1216 ntBASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Ldb3-207ENSMUST00000227819 1499 ntBASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sh3rf1Q69ZI1 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms