Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Mir497b-201ENSMUST00000093601 125 ntBASIC14.85□□□□□ -0.03
Col6a1Q04857 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.85□□□□□ -0.03
Col6a1Q04857 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.85□□□□□ -0.03
Col6a1Q04857 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.85□□□□□ -0.03
Col6a1Q04857 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.85□□□□□ -0.03
Col6a1Q04857 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.85□□□□□ -0.03
Col6a1Q04857 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col6a1Q04857 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col6a1Q04857 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.84□□□□□ -0.03
Col6a1Q04857 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Mir686-201ENSMUST00000102174 109 ntBASIC14.84□□□□□ -0.03
Col6a1Q04857 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Gm14381-201ENSMUST00000122105 414 ntBASIC14.84□□□□□ -0.03
Col6a1Q04857 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.84□□□□□ -0.03
Col6a1Q04857 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 AC159196.2-201ENSMUST00000224082 1622 ntBASIC14.84□□□□□ -0.03
Col6a1Q04857 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col6a1Q04857 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col6a1Q04857 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Col6a1Q04857 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col6a1Q04857 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col6a1Q04857 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col6a1Q04857 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.83□□□□□ -0.03
Col6a1Q04857 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col6a1Q04857 Gm43289-201ENSMUST00000200537 1475 ntBASIC14.83□□□□□ -0.03
Col6a1Q04857 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col6a1Q04857 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.83□□□□□ -0.04
Col6a1Q04857 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Gm25668-201ENSMUST00000157700 129 ntBASIC14.83□□□□□ -0.04
Col6a1Q04857 Gm2991-201ENSMUST00000173338 480 ntBASIC14.83□□□□□ -0.04
Col6a1Q04857 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.83□□□□□ -0.04
Col6a1Q04857 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.83□□□□□ -0.04
Col6a1Q04857 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col6a1Q04857 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms