Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdx2P43241 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Cdx2P43241 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cdx2P43241 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.73□□□□□ -0.37
Cdx2P43241 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.73□□□□□ -0.37
Cdx2P43241 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.73□□□□□ -0.37
Cdx2P43241 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cdx2P43241 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Cdx2P43241 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx2P43241 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Cdx2P43241 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Cdx2P43241 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC12.72□□□□□ -0.37
Cdx2P43241 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.72□□□□□ -0.37
Cdx2P43241 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.72□□□□□ -0.37
Cdx2P43241 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.72□□□□□ -0.37
Cdx2P43241 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cdx2P43241 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC12.72□□□□□ -0.37
Cdx2P43241 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.72□□□□□ -0.37
Cdx2P43241 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx2P43241 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx2P43241 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms