Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Cops4O88544 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC12.42□□□□□ -0.42
Cops4O88544 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC12.42□□□□□ -0.42
Cops4O88544 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.42□□□□□ -0.42
Cops4O88544 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Cops4O88544 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.42□□□□□ -0.42
Cops4O88544 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Cops4O88544 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cops4O88544 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.41□□□□□ -0.42
Cops4O88544 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.41□□□□□ -0.42
Cops4O88544 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.41□□□□□ -0.42
Cops4O88544 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC12.41□□□□□ -0.42
Cops4O88544 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Cops4O88544 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC12.41□□□□□ -0.42
Cops4O88544 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC12.41□□□□□ -0.42
Cops4O88544 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.41□□□□□ -0.42
Cops4O88544 Ndufaf2-202ENSMUST00000223734 556 ntBASIC12.41□□□□□ -0.42
Cops4O88544 AC124549.3-201ENSMUST00000225541 367 ntBASIC12.41□□□□□ -0.42
Cops4O88544 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.41□□□□□ -0.42
Cops4O88544 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Cops4O88544 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Cops4O88544 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Cops4O88544 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Cops4O88544 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.41□□□□□ -0.42
Cops4O88544 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.41□□□□□ -0.42
Cops4O88544 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cops4O88544 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Cops4O88544 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.4□□□□□ -0.42
Cops4O88544 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Cops4O88544 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC12.4□□□□□ -0.42
Cops4O88544 AA543401-201ENSMUST00000164248 1269 ntBASIC12.4□□□□□ -0.42
Cops4O88544 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC12.4□□□□□ -0.42
Cops4O88544 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC12.4□□□□□ -0.42
Cops4O88544 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC12.4□□□□□ -0.42
Cops4O88544 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC12.4□□□□□ -0.42
Cops4O88544 Gm43514-201ENSMUST00000198852 424 ntBASIC12.4□□□□□ -0.42
Cops4O88544 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Cops4O88544 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Cops4O88544 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Cops4O88544 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Cops4O88544 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Cops4O88544 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.39□□□□□ -0.43
Cops4O88544 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Cops4O88544 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
Cops4O88544 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms