Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm37497-201ENSMUST00000195830 798 ntBASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Chd3B1AR17 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.16□□□□□ -0.3
Chd3B1AR17 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm10146-201ENSMUST00000072739 309 ntBASIC13.16□□□□□ -0.3
Chd3B1AR17 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Mir1247-201ENSMUST00000116706 82 ntBASIC13.15□□□□□ -0.3
Chd3B1AR17 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm29649-201ENSMUST00000185649 419 ntBASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm43133-201ENSMUST00000197472 463 ntBASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC13.15□□□□□ -0.3
Chd3B1AR17 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Chd3B1AR17 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm14608-201ENSMUST00000120030 1553 ntBASIC13.15□□□□□ -0.3
Chd3B1AR17 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chd3B1AR17 Gm12626-201ENSMUST00000117339 1983 ntBASIC13.15□□□□□ -0.31
Chd3B1AR17 Gm12623-201ENSMUST00000119849 1983 ntBASIC13.15□□□□□ -0.31
Chd3B1AR17 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.15□□□□□ -0.31
Chd3B1AR17 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Chd3B1AR17 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm27682-201ENSMUST00000183930 110 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm9124-201ENSMUST00000191789 1092 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm9113-201ENSMUST00000192510 1018 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm9131-201ENSMUST00000193557 1089 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm9121-201ENSMUST00000193749 1071 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Matn2-206ENSMUST00000228570 2798 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm12742-201ENSMUST00000117326 410 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Gm9823-201ENSMUST00000051212 327 ntBASIC13.14□□□□□ -0.31
Chd3B1AR17 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms