Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Gm12585-201ENSMUST00000117307 290 ntBASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Gm19220-201ENSMUST00000222682 803 ntBASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Mir6392-201ENSMUST00000184924 108 ntBASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm6916-202ENSMUST00000205523 195 ntBASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.11■□□□□ 0.01
Smc1aQ9CU62 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Smc1aQ9CU62 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm15393-201ENSMUST00000120499 219 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm33320-201ENSMUST00000192232 530 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Smc1aQ9CU62 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 BC001981-202ENSMUST00000191393 1545 ntBASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.09■□□□□ 0.01
Smc1aQ9CU62 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms