Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Msh4Q99MT2 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Gm42690-201ENSMUST00000197921 1836 ntBASIC13.15□□□□□ -0.3
Msh4Q99MT2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msh4Q99MT2 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Gm2445-201ENSMUST00000182798 989 ntBASIC13.14□□□□□ -0.31
Msh4Q99MT2 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msh4Q99MT2 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Gm28631-201ENSMUST00000190740 334 ntBASIC13.13□□□□□ -0.31
Msh4Q99MT2 Gm17795-201ENSMUST00000214505 757 ntBASIC13.13□□□□□ -0.31
Msh4Q99MT2 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.13□□□□□ -0.31
Msh4Q99MT2 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Msh4Q99MT2 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.12□□□□□ -0.31
Msh4Q99MT2 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms