Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm11814-201ENSMUST00000119515 929 ntBASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm6152-201ENSMUST00000151704 340 ntBASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm7561-201ENSMUST00000211203 886 ntBASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm18473-201ENSMUST00000220543 868 ntBASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Itm2b-204ENSMUST00000228637 783 ntBASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim47Q8C0E3 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm27486-201ENSMUST00000184923 80 ntBASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm6266-201ENSMUST00000203844 806 ntBASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm8598-201ENSMUST00000221184 836 ntBASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.93□□□□□ -0.02
Trim47Q8C0E3 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm12390-201ENSMUST00000117897 397 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm9124-201ENSMUST00000191789 1092 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm9113-201ENSMUST00000192510 1018 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm9131-201ENSMUST00000193557 1089 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm9121-201ENSMUST00000193749 1071 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm25857-201ENSMUST00000082788 129 ntBASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms