Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC15.89■□□□□ 0.13
Trim56Q80VI1 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Proscos-202ENSMUST00000178990 666 ntBASIC15.89■□□□□ 0.13
Trim56Q80VI1 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Gm5186-201ENSMUST00000218781 920 ntBASIC15.89■□□□□ 0.13
Trim56Q80VI1 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.89■□□□□ 0.13
Trim56Q80VI1 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.88■□□□□ 0.13
Trim56Q80VI1 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Gm6447-201ENSMUST00000118905 835 ntBASIC15.88■□□□□ 0.13
Trim56Q80VI1 Gm11803-201ENSMUST00000119966 444 ntBASIC15.88■□□□□ 0.13
Trim56Q80VI1 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trim56Q80VI1 Abhd6-203ENSMUST00000225234 1958 ntBASIC15.87■□□□□ 0.13
Trim56Q80VI1 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Grk6-205ENSMUST00000224653 2976 ntBASIC15.87■□□□□ 0.13
Trim56Q80VI1 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gm17150-201ENSMUST00000165577 381 ntBASIC15.87■□□□□ 0.13
Trim56Q80VI1 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gm17794-201ENSMUST00000220252 955 ntBASIC15.87■□□□□ 0.13
Trim56Q80VI1 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Gm18630-201ENSMUST00000222109 1397 ntBASIC15.87■□□□□ 0.13
Trim56Q80VI1 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trim56Q80VI1 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Gm43134-201ENSMUST00000199434 1886 ntBASIC15.86■□□□□ 0.13
Trim56Q80VI1 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms