Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Upf3aQ3ULJ3 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Upf3aQ3ULJ3 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Gm11591-201ENSMUST00000120063 702 ntBASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Upf3aQ3ULJ3 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm11637-201ENSMUST00000120601 592 ntBASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm6334-201ENSMUST00000207083 228 ntBASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm8227-201ENSMUST00000223306 571 ntBASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Upf3aQ3ULJ3 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm10608-202ENSMUST00000213924 676 ntBASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms