Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC20.21■□□□□ 0.83
Col17a1Q07563 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col17a1Q07563 Gm13034-201ENSMUST00000121342 3177 ntBASIC20.21■□□□□ 0.83
Col17a1Q07563 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
Col17a1Q07563 CT009713.10-201ENSMUST00000225013 1986 ntBASIC20.21■□□□□ 0.83
Col17a1Q07563 Gm38197-201ENSMUST00000192320 2122 ntBASIC20.21■□□□□ 0.83
Col17a1Q07563 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col17a1Q07563 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC20.21■□□□□ 0.83
Col17a1Q07563 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col17a1Q07563 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
Col17a1Q07563 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC20.2■□□□□ 0.82
Col17a1Q07563 Gm4868-201ENSMUST00000164138 789 ntBASIC20.2■□□□□ 0.82
Col17a1Q07563 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC20.2■□□□□ 0.82
Col17a1Q07563 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Gm45909-201ENSMUST00000212413 1031 ntBASIC20.2■□□□□ 0.82
Col17a1Q07563 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC20.2■□□□□ 0.82
Col17a1Q07563 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col17a1Q07563 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm27530-201ENSMUST00000184096 98 ntBASIC20.19■□□□□ 0.82
Col17a1Q07563 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm43416-201ENSMUST00000201916 1015 ntBASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm18706-201ENSMUST00000210053 1066 ntBASIC20.19■□□□□ 0.82
Col17a1Q07563 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC20.19■□□□□ 0.82
Col17a1Q07563 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC20.19■□□□□ 0.82
Col17a1Q07563 AC158388.3-202ENSMUST00000225517 775 ntBASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Gm4081-201ENSMUST00000195287 1838 ntBASIC20.19■□□□□ 0.82
Col17a1Q07563 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col17a1Q07563 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC20.19■□□□□ 0.82
Col17a1Q07563 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm23085-201ENSMUST00000157849 293 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm7985-201ENSMUST00000183329 981 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC20.18■□□□□ 0.82
Col17a1Q07563 AC122408.1-201ENSMUST00000218949 218 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm4604-201ENSMUST00000025040 390 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm13019-201ENSMUST00000120000 276 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm6485-201ENSMUST00000160676 439 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 2310034O05Rik-201ENSMUST00000185221 1107 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 Trav11n-201ENSMUST00000200113 343 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Gm7395-201ENSMUST00000216059 1045 ntBASIC20.18■□□□□ 0.82
Col17a1Q07563 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col17a1Q07563 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Gm9129-201ENSMUST00000218173 1689 ntBASIC20.17■□□□□ 0.82
Col17a1Q07563 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms