Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.49□□□□□ -0.57
Col8a1Q00780 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm25668-201ENSMUST00000157700 129 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm20482-202ENSMUST00000174729 825 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm38158-201ENSMUST00000194617 339 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Gm30437-201ENSMUST00000206086 1201 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.49□□□□□ -0.57
Col8a1Q00780 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Col8a1Q00780 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col8a1Q00780 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm43697-201ENSMUST00000199637 2581 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm6222-202ENSMUST00000182143 629 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm37489-201ENSMUST00000191883 159 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm44608-201ENSMUST00000206827 855 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Itm2b-204ENSMUST00000228637 783 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm5161-201ENSMUST00000075243 853 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.48□□□□□ -0.57
Col8a1Q00780 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms