Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
Cux1P53564 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Cux1P53564 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Cux1P53564 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Cux1P53564 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Gm14130-201ENSMUST00000118417 987 ntBASIC20.37■□□□□ 0.85
Cux1P53564 Gm12217-201ENSMUST00000118858 696 ntBASIC20.37■□□□□ 0.85
Cux1P53564 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC20.37■□□□□ 0.85
Cux1P53564 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Cux1P53564 Mir6979-201ENSMUST00000183927 56 ntBASIC20.37■□□□□ 0.85
Cux1P53564 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC20.37■□□□□ 0.85
Cux1P53564 Ighv8-10-201ENSMUST00000199579 358 ntBASIC20.37■□□□□ 0.85
Cux1P53564 Gm45224-201ENSMUST00000208203 414 ntBASIC20.37■□□□□ 0.85
Cux1P53564 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC20.37■□□□□ 0.85
Cux1P53564 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Cux1P53564 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC20.37■□□□□ 0.85
Cux1P53564 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
Cux1P53564 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cux1P53564 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Gm13736-201ENSMUST00000119272 253 ntBASIC20.36■□□□□ 0.85
Cux1P53564 B9d1os-201ENSMUST00000137010 674 ntBASIC20.36■□□□□ 0.85
Cux1P53564 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 Gm26956-201ENSMUST00000182176 986 ntBASIC20.36■□□□□ 0.85
Cux1P53564 Mir7221-201ENSMUST00000184009 72 ntBASIC20.36■□□□□ 0.85
Cux1P53564 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC20.36■□□□□ 0.85
Cux1P53564 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC20.36■□□□□ 0.85
Cux1P53564 Nsd1-205ENSMUST00000224693 852 ntBASIC20.36■□□□□ 0.85
Cux1P53564 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cux1P53564 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Cux1P53564 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Cux1P53564 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC20.35■□□□□ 0.85
Cux1P53564 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC20.35■□□□□ 0.85
Cux1P53564 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC20.35■□□□□ 0.85
Cux1P53564 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
Cux1P53564 Gm43134-201ENSMUST00000199434 1886 ntBASIC20.35■□□□□ 0.85
Cux1P53564 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC20.35■□□□□ 0.85
Cux1P53564 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cux1P53564 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC20.34■□□□□ 0.85
Cux1P53564 Gm14109-201ENSMUST00000118814 309 ntBASIC20.34■□□□□ 0.85
Cux1P53564 Gm13492-201ENSMUST00000119772 665 ntBASIC20.34■□□□□ 0.85
Cux1P53564 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC20.34■□□□□ 0.85
Cux1P53564 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Cux1P53564 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC20.34■□□□□ 0.85
Cux1P53564 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Cux1P53564 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms