Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm37736-201ENSMUST00000193564 2802 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.76□□□□□ -0.37
Cdx2P43241 Gm26185-201ENSMUST00000157692 266 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Gm20482-202ENSMUST00000174729 825 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Mir5132-201ENSMUST00000175166 71 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Gm3890-201ENSMUST00000182416 207 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.76□□□□□ -0.37
Cdx2P43241 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.76□□□□□ -0.37
Cdx2P43241 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx2P43241 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx2P43241 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Cdx2P43241 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Cdx2P43241 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Cdx2P43241 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Cdx2P43241 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdx2P43241 Gm11637-201ENSMUST00000120601 592 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 Gm12363-201ENSMUST00000122250 668 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Gm25668-201ENSMUST00000157700 129 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdx2P43241 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.75□□□□□ -0.37
Cdx2P43241 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Gm45546-201ENSMUST00000211053 2394 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.75□□□□□ -0.37
Cdx2P43241 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.75□□□□□ -0.37
Cdx2P43241 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Cdx2P43241 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
Cdx2P43241 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Cdx2P43241 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Cdx2P43241 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx2P43241 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdx2P43241 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdx2P43241 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Gm2383-201ENSMUST00000181461 807 ntBASIC12.74□□□□□ -0.37
Cdx2P43241 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdx2P43241 Gm4768-201ENSMUST00000206199 686 ntBASIC12.74□□□□□ -0.37
Cdx2P43241 Gm21769-201ENSMUST00000211922 111 ntBASIC12.74□□□□□ -0.37
Cdx2P43241 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdx2P43241 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx2P43241 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms