Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC11.01□□□□□ -0.65
Sdc1P18828 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC11.01□□□□□ -0.65
Sdc1P18828 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.01□□□□□ -0.65
Sdc1P18828 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 CT025626.1-201ENSMUST00000223735 1455 ntBASIC11.01□□□□□ -0.65
Sdc1P18828 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Gm5989-201ENSMUST00000096092 2077 ntBASIC11.01□□□□□ -0.65
Sdc1P18828 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Sdc1P18828 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Gm4899-201ENSMUST00000178708 719 ntBASIC11.01□□□□□ -0.65
Sdc1P18828 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Otx2os1-206ENSMUST00000228153 787 ntBASIC11.01□□□□□ -0.65
Sdc1P18828 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.01□□□□□ -0.65
Sdc1P18828 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Tmed9-203ENSMUST00000224741 1450 ntBASIC11□□□□□ -0.65
Sdc1P18828 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Sdc1P18828 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11□□□□□ -0.65
Sdc1P18828 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Sdc1P18828 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC11□□□□□ -0.65
Sdc1P18828 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Sdc1P18828 AC139350.1-201ENSMUST00000227064 1594 ntBASIC11□□□□□ -0.65
Sdc1P18828 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC11□□□□□ -0.65
Sdc1P18828 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC11□□□□□ -0.65
Sdc1P18828 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC11□□□□□ -0.65
Sdc1P18828 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC11□□□□□ -0.65
Sdc1P18828 Ighv8-14-201ENSMUST00000196781 358 ntBASIC11□□□□□ -0.65
Sdc1P18828 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 AC159301.1-201ENSMUST00000225130 1182 ntBASIC11□□□□□ -0.65
Sdc1P18828 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Sdc1P18828 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC11□□□□□ -0.65
Sdc1P18828 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Sdc1P18828 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Sdc1P18828 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Sdc1P18828 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms