Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Chd3B1AR17 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm26927-201ENSMUST00000182385 965 ntBASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm29705-201ENSMUST00000212598 474 ntBASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Chd3B1AR17 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.19□□□□□ -0.3
Chd3B1AR17 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Chd3B1AR17 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Gm16177-201ENSMUST00000120728 718 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC13.18□□□□□ -0.3
Chd3B1AR17 Gm45841-201ENSMUST00000207700 164 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Gm40466-201ENSMUST00000212174 422 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Chd3B1AR17 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.18□□□□□ -0.3
Chd3B1AR17 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Chd3B1AR17 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.18□□□□□ -0.3
Chd3B1AR17 Ptprs-211ENSMUST00000223859 5588 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.17□□□□□ -0.3
Chd3B1AR17 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm2420-202ENSMUST00000202224 2249 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm15544-201ENSMUST00000118776 1531 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm19184-201ENSMUST00000196798 928 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Chd3B1AR17 AC173210.1-201ENSMUST00000222341 1131 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gm8399-201ENSMUST00000082300 1117 ntBASIC13.17□□□□□ -0.3
Chd3B1AR17 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chd3B1AR17 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Chd3B1AR17 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.16□□□□□ -0.3
Chd3B1AR17 Mir3547-201ENSMUST00000175461 88 ntBASIC13.16□□□□□ -0.3
Chd3B1AR17 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chd3B1AR17 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 77.5 ms