Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Gm18041-201ENSMUST00000218210 618 ntBASIC13.84□□□□□ -0.19
Vps28Q9D1C8 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Vps28Q9D1C8 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Vps28Q9D1C8 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm15429-201ENSMUST00000151268 798 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm5161-201ENSMUST00000075243 853 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Gm15163-201ENSMUST00000120749 1302 ntBASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Vps28Q9D1C8 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Gm15371-201ENSMUST00000117057 784 ntBASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Gm13689-201ENSMUST00000119360 685 ntBASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC13.82□□□□□ -0.2
Vps28Q9D1C8 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms