Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gm11524-201ENSMUST00000119349 807 ntBASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gm26464-201ENSMUST00000157094 305 ntBASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Gm7730-201ENSMUST00000212486 454 ntBASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx56Q9D0R4 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gm5354-201ENSMUST00000182417 973 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gm44855-201ENSMUST00000205725 362 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 AC158982.1-201ENSMUST00000228377 901 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx56Q9D0R4 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm12403-201ENSMUST00000121384 959 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm15376-201ENSMUST00000122258 783 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm4335-201ENSMUST00000182581 1004 ntBASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.19□□□□□ -0.14
Ddx56Q9D0R4 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms