Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Gm15678-201ENSMUST00000117573 960 ntBASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Gm27701-201ENSMUST00000184498 110 ntBASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 AC166349.1-201ENSMUST00000220866 695 ntBASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Gm12341-201ENSMUST00000119724 503 ntBASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ushbp1Q8R370 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gm5354-201ENSMUST00000182417 973 ntBASIC15.14■□□□□ 0.01
Ushbp1Q8R370 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ushbp1Q8R370 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Gm18905-201ENSMUST00000205454 928 ntBASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Rassf8-202ENSMUST00000058538 1131 ntBASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms