Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 CT025678.1-201ENSMUST00000214795 2972 ntBASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc40Q8BI79 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Gm17837-201ENSMUST00000186435 985 ntBASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc40Q8BI79 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Ccdc40Q8BI79 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Ccdc40Q8BI79 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Ccdc40Q8BI79 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Ccdc40Q8BI79 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Mir698-201ENSMUST00000102164 109 ntBASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Gm12585-201ENSMUST00000117307 290 ntBASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc40Q8BI79 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc40Q8BI79 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms