Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Trim28Q62318 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm43134-201ENSMUST00000199434 1886 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trim28Q62318 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm16379-201ENSMUST00000161469 348 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm27501-201ENSMUST00000183599 107 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Gm8762-201ENSMUST00000193486 339 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
Trim28Q62318 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trim28Q62318 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trim28Q62318 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
Trim28Q62318 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm8793-201ENSMUST00000183069 1303 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm28386-201ENSMUST00000189147 1849 ntBASIC17.4■□□□□ 0.38
Trim28Q62318 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim28Q62318 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.38
Trim28Q62318 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim28Q62318 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trim28Q62318 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trim28Q62318 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim28Q62318 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Trim28Q62318 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trim28Q62318 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Trim28Q62318 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trim28Q62318 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Trim28Q62318 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC17.39■□□□□ 0.37
Trim28Q62318 Gm7809-201ENSMUST00000153199 742 ntBASIC17.39■□□□□ 0.37
Trim28Q62318 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC17.39■□□□□ 0.37
Trim28Q62318 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim28Q62318 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim28Q62318 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trim28Q62318 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Gm11658-201ENSMUST00000120913 1008 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Gm12539-201ENSMUST00000121549 1098 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Gm2467-201ENSMUST00000182266 1010 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Gm6981-201ENSMUST00000182467 1008 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim28Q62318 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trim28Q62318 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim28Q62318 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim28Q62318 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
Trim28Q62318 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Gm18222-201ENSMUST00000202416 1387 ntBASIC17.38■□□□□ 0.37
Trim28Q62318 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim28Q62318 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Gm3890-201ENSMUST00000182416 207 ntBASIC17.37■□□□□ 0.37
Trim28Q62318 Gm43179-201ENSMUST00000198797 275 ntBASIC17.37■□□□□ 0.37
Trim28Q62318 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC17.37■□□□□ 0.37
Trim28Q62318 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC17.37■□□□□ 0.37
Trim28Q62318 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC17.37■□□□□ 0.37
Trim28Q62318 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim28Q62318 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 76.1 ms