Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm5939-201ENSMUST00000119613 2874 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm11524-201ENSMUST00000119349 807 ntBASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm28760-201ENSMUST00000185995 736 ntBASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC17.09■□□□□ 0.33
Trim58Q5NCC9 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm12500-202ENSMUST00000186471 2428 ntBASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim58Q5NCC9 Gm43570-201ENSMUST00000199951 3688 ntBASIC17.08■□□□□ 0.33
Trim58Q5NCC9 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC17.08■□□□□ 0.33
Trim58Q5NCC9 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim58Q5NCC9 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim58Q5NCC9 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim58Q5NCC9 Syt7-205ENSMUST00000224135 1557 ntBASIC17.08■□□□□ 0.32
Trim58Q5NCC9 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Gm31326-201ENSMUST00000191856 1048 ntBASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Gm43364-201ENSMUST00000196046 3274 ntBASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim58Q5NCC9 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Gm37861-201ENSMUST00000193534 2869 ntBASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim58Q5NCC9 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim58Q5NCC9 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms