Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm9520-201ENSMUST00000209460 1253 ntBASIC14.08□□□□□ -0.16
Rnf40Q3U319 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Gm7461-201ENSMUST00000058918 827 ntBASIC14.08□□□□□ -0.16
Rnf40Q3U319 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.08□□□□□ -0.16
Rnf40Q3U319 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm5797-201ENSMUST00000100886 997 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm7222-201ENSMUST00000117512 906 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 1700066B17Rik-203ENSMUST00000191299 536 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm36982-201ENSMUST00000193796 1128 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 A930002H02Rik-201ENSMUST00000208672 1178 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf40Q3U319 Mbnl2-204ENSMUST00000227012 2390 ntBASIC14.07□□□□□ -0.16
Rnf40Q3U319 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm9279-201ENSMUST00000223175 1606 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm3676-201ENSMUST00000111869 899 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm2272-201ENSMUST00000194903 582 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Gm44608-201ENSMUST00000206827 855 ntBASIC14.06□□□□□ -0.16
Rnf40Q3U319 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf40Q3U319 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms