Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col28a1Q2UY11 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col28a1Q2UY11 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col28a1Q2UY11 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm27306-201ENSMUST00000183970 107 ntBASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm27989-201ENSMUST00000184721 107 ntBASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm2423-201ENSMUST00000074863 733 ntBASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col28a1Q2UY11 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gm11543-201ENSMUST00000120758 370 ntBASIC13.13□□□□□ -0.31
Col28a1Q2UY11 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.13□□□□□ -0.31
Col28a1Q2UY11 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col28a1Q2UY11 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Syt7-205ENSMUST00000224135 1557 ntBASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gm13517-201ENSMUST00000120782 1495 ntBASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms