Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.34□□□□□ -0.43
Cdh11P55288 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Cdh11P55288 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdh11P55288 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdh11P55288 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdh11P55288 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.33□□□□□ -0.43
Cdh11P55288 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Cdh11P55288 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.33□□□□□ -0.44
Cdh11P55288 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Gm15487-201ENSMUST00000122373 465 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Cdh11P55288 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.33□□□□□ -0.44
Cdh11P55288 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm46209-201ENSMUST00000217912 553 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Shd-206ENSMUST00000225145 998 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdh11P55288 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Cdh11P55288 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC12.33□□□□□ -0.44
Cdh11P55288 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdh11P55288 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm15653-201ENSMUST00000119247 907 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Gm12882-201ENSMUST00000121696 517 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Cdh11P55288 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm27631-201ENSMUST00000184163 466 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm45453-201ENSMUST00000211758 853 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Cdh11P55288 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdh11P55288 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdh11P55288 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.32□□□□□ -0.44
Cdh11P55288 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms