Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.28□□□□□ -0.12
Shmt1P50431 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.28□□□□□ -0.12
Shmt1P50431 Gm26315-201ENSMUST00000083890 321 ntBASIC14.28□□□□□ -0.12
Shmt1P50431 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Shmt1P50431 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Shmt1P50431 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Shmt1P50431 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Shmt1P50431 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Shmt1P50431 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Shmt1P50431 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Shmt1P50431 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.27□□□□□ -0.12
Shmt1P50431 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Shmt1P50431 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.27□□□□□ -0.13
Shmt1P50431 Mir1894-201ENSMUST00000122802 81 ntBASIC14.27□□□□□ -0.13
Shmt1P50431 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.27□□□□□ -0.13
Shmt1P50431 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.27□□□□□ -0.13
Shmt1P50431 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.27□□□□□ -0.13
Shmt1P50431 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.27□□□□□ -0.13
Shmt1P50431 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Shmt1P50431 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.27□□□□□ -0.13
Shmt1P50431 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Shmt1P50431 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Shmt1P50431 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Shmt1P50431 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.26□□□□□ -0.13
Shmt1P50431 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Shmt1P50431 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Shmt1P50431 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.26□□□□□ -0.13
Shmt1P50431 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.26□□□□□ -0.13
Shmt1P50431 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC14.26□□□□□ -0.13
Shmt1P50431 Gm8652-201ENSMUST00000181363 964 ntBASIC14.26□□□□□ -0.13
Shmt1P50431 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Shmt1P50431 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.26□□□□□ -0.13
Shmt1P50431 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Shmt1P50431 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.25□□□□□ -0.13
Shmt1P50431 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.25□□□□□ -0.13
Shmt1P50431 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Shmt1P50431 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.25□□□□□ -0.13
Shmt1P50431 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Shmt1P50431 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Shmt1P50431 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.25□□□□□ -0.13
Shmt1P50431 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms