Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Rfx3P48381 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.22□□□□□ -0.45
Rfx3P48381 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.22□□□□□ -0.45
Rfx3P48381 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.22□□□□□ -0.45
Rfx3P48381 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Rfx3P48381 Auts2-212ENSMUST00000178555 309 ntBASIC12.22□□□□□ -0.45
Rfx3P48381 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.22□□□□□ -0.45
Rfx3P48381 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.22□□□□□ -0.45
Rfx3P48381 Gm46209-201ENSMUST00000217912 553 ntBASIC12.22□□□□□ -0.45
Rfx3P48381 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Rfx3P48381 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Rfx3P48381 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Rfx3P48381 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.22□□□□□ -0.45
Rfx3P48381 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rfx3P48381 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Rfx3P48381 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Rfx3P48381 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Rfx3P48381 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.21□□□□□ -0.45
Rfx3P48381 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Rfx3P48381 Gm21470-201ENSMUST00000187680 696 ntBASIC12.21□□□□□ -0.45
Rfx3P48381 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.21□□□□□ -0.45
Rfx3P48381 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.21□□□□□ -0.45
Rfx3P48381 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Rfx3P48381 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Rfx3P48381 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.21□□□□□ -0.46
Rfx3P48381 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.21□□□□□ -0.46
Rfx3P48381 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.21□□□□□ -0.46
Rfx3P48381 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Rfx3P48381 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.2□□□□□ -0.46
Rfx3P48381 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Rfx3P48381 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.2□□□□□ -0.46
Rfx3P48381 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.2□□□□□ -0.46
Rfx3P48381 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Gm15393-201ENSMUST00000120499 219 ntBASIC12.2□□□□□ -0.46
Rfx3P48381 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Rfx3P48381 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms