Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm24420-201ENSMUST00000176676 59 ntBASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm25144-201ENSMUST00000179561 110 ntBASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm25352-201ENSMUST00000179815 110 ntBASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gm14452-201ENSMUST00000118680 1632 ntBASIC13.06□□□□□ -0.32
Tnfsf4P43488 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Tnfsf4P43488 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm12585-201ENSMUST00000117307 290 ntBASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.05□□□□□ -0.32
Tnfsf4P43488 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.05□□□□□ -0.32
Tnfsf4P43488 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Tnfsf4P43488 Gm13859-201ENSMUST00000119936 1423 ntBASIC13.05□□□□□ -0.32
Tnfsf4P43488 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm6912-201ENSMUST00000117218 544 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm5425-201ENSMUST00000214125 459 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms