Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.46■□□□□ 0.39
Col18a1P39061 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC17.46■□□□□ 0.39
Col18a1P39061 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Gm29155-201ENSMUST00000185910 269 ntBASIC17.46■□□□□ 0.39
Col18a1P39061 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Gm21811-201ENSMUST00000096485 930 ntBASIC17.46■□□□□ 0.39
Col18a1P39061 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Col18a1P39061 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.46■□□□□ 0.39
Col18a1P39061 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col18a1P39061 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Gm5466-201ENSMUST00000119395 1890 ntBASIC17.46■□□□□ 0.39
Col18a1P39061 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col18a1P39061 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col18a1P39061 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col18a1P39061 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col18a1P39061 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col18a1P39061 Gm14644-201ENSMUST00000116671 647 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Gm12899-201ENSMUST00000120565 551 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Gm12196-201ENSMUST00000120954 262 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC17.45■□□□□ 0.38
Col18a1P39061 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC17.45■□□□□ 0.38
Col18a1P39061 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Col18a1P39061 Gm28882-201ENSMUST00000185504 314 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Col18a1P39061 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col18a1P39061 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC17.45■□□□□ 0.38
Col18a1P39061 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Col18a1P39061 Gm13315-201ENSMUST00000120376 991 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Gm8494-201ENSMUST00000178171 1233 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Gm27530-201ENSMUST00000184096 98 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Col18a1P39061 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Col18a1P39061 CT485607.1-201ENSMUST00000216100 85 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Ginm1-202ENSMUST00000065124 300 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col18a1P39061 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.45■□□□□ 0.38
Col18a1P39061 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col18a1P39061 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col18a1P39061 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col18a1P39061 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC17.44■□□□□ 0.38
Col18a1P39061 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC17.44■□□□□ 0.38
Col18a1P39061 Gm3671-201ENSMUST00000182463 1007 ntBASIC17.44■□□□□ 0.38
Col18a1P39061 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC17.44■□□□□ 0.38
Col18a1P39061 Gm43962-201ENSMUST00000203898 190 ntBASIC17.44■□□□□ 0.38
Col18a1P39061 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC17.44■□□□□ 0.38
Col18a1P39061 AC129219.2-201ENSMUST00000224324 701 ntBASIC17.44■□□□□ 0.38
Col18a1P39061 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col18a1P39061 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col18a1P39061 Mir339-201ENSMUST00000083659 96 ntBASIC17.44■□□□□ 0.38
Col18a1P39061 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col18a1P39061 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms