Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sdc1P18828 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
Sdc1P18828 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Sdc1P18828 CT573086.2-201ENSMUST00000227277 4992 ntBASIC11.03□□□□□ -0.64
Sdc1P18828 Mir874-201ENSMUST00000104769 76 ntBASIC11.03□□□□□ -0.64
Sdc1P18828 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC11.03□□□□□ -0.64
Sdc1P18828 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Sdc1P18828 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC11.03□□□□□ -0.64
Sdc1P18828 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC11.03□□□□□ -0.64
Sdc1P18828 AC139350.3-201ENSMUST00000226151 420 ntBASIC11.03□□□□□ -0.64
Sdc1P18828 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sdc1P18828 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sdc1P18828 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC11.03□□□□□ -0.64
Sdc1P18828 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Gm42863-201ENSMUST00000197875 2958 ntBASIC11.03□□□□□ -0.64
Sdc1P18828 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sdc1P18828 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sdc1P18828 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.02□□□□□ -0.64
Sdc1P18828 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.02□□□□□ -0.64
Sdc1P18828 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
Sdc1P18828 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
Sdc1P18828 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Sdc1P18828 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sdc1P18828 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Sdc1P18828 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Sdc1P18828 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC11.02□□□□□ -0.65
Sdc1P18828 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Gm12895-201ENSMUST00000122214 226 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Sdc1P18828 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
Sdc1P18828 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
Sdc1P18828 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC11.02□□□□□ -0.65
Sdc1P18828 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC11.02□□□□□ -0.65
Sdc1P18828 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Gm10154-201ENSMUST00000084445 354 ntBASIC11.02□□□□□ -0.65
Sdc1P18828 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.02□□□□□ -0.65
Sdc1P18828 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Sdc1P18828 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sdc1P18828 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Sdc1P18828 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.02□□□□□ -0.65
Sdc1P18828 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.01□□□□□ -0.65
Sdc1P18828 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Sdc1P18828 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.01□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms