Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm6415-201ENSMUST00000118488 348 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm12428-201ENSMUST00000119844 727 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm9229-201ENSMUST00000222777 126 ntBASIC12.81□□□□□ -0.36
Use1Q9CQ56 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm4804-201ENSMUST00000182234 999 ntBASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm28630-201ENSMUST00000187806 498 ntBASIC12.8□□□□□ -0.36
Use1Q9CQ56 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 AC140397.2-201ENSMUST00000224213 834 ntBASIC12.8□□□□□ -0.36
Use1Q9CQ56 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Use1Q9CQ56 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.79□□□□□ -0.36
Use1Q9CQ56 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm15393-201ENSMUST00000120499 219 ntBASIC12.79□□□□□ -0.36
Use1Q9CQ56 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm2756-201ENSMUST00000195851 400 ntBASIC12.79□□□□□ -0.36
Use1Q9CQ56 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm5312-201ENSMUST00000203728 547 ntBASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Gm5425-201ENSMUST00000214125 459 ntBASIC12.79□□□□□ -0.36
Use1Q9CQ56 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Use1Q9CQ56 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms