Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm13689-201ENSMUST00000119360 685 ntBASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gm12416-201ENSMUST00000120911 1008 ntBASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gm29608-201ENSMUST00000190444 463 ntBASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 AC154687.2-201ENSMUST00000223853 640 ntBASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Grk6-205ENSMUST00000224653 2976 ntBASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Brf1Q8CFK2 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Gm28386-201ENSMUST00000189147 1849 ntBASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Brf1Q8CFK2 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm43273-201ENSMUST00000199649 2594 ntBASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm18307-201ENSMUST00000206864 949 ntBASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm45668-201ENSMUST00000211271 493 ntBASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 AC155286.1-201ENSMUST00000218632 448 ntBASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm15823-201ENSMUST00000064305 670 ntBASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Brf1Q8CFK2 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms