Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm8927-201ENSMUST00000181978 981 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm21470-201ENSMUST00000187680 696 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm3222-201ENSMUST00000071282 990 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28aQ8CEI3 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Gm27741-201ENSMUST00000185060 237 ntBASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc28aQ8CEI3 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Mir874-201ENSMUST00000104769 76 ntBASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ccdc28aQ8CEI3 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc28aQ8CEI3 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms