Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Gm9797-201ENSMUST00000052902 613 ntBASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.06□□□□□ -0.48
Ube3dQ8BX13 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm21854-201ENSMUST00000179901 471 ntBASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm28760-201ENSMUST00000185995 736 ntBASIC12.05□□□□□ -0.48
Ube3dQ8BX13 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ube3dQ8BX13 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms