Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Gm43133-201ENSMUST00000197472 463 ntBASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Gm4935-201ENSMUST00000221316 1198 ntBASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Gm37133-201ENSMUST00000192705 1922 ntBASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC18.46■□□□□ 0.55
Usp40Q8BWR4 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Usp40Q8BWR4 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Usp40Q8BWR4 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Gm12329-201ENSMUST00000120829 1007 ntBASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Gm17383-201ENSMUST00000078739 1041 ntBASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp40Q8BWR4 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Sorbs3-204ENSMUST00000227929 2460 ntBASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Gm14723-201ENSMUST00000118686 215 ntBASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Gm16479-201ENSMUST00000121706 932 ntBASIC18.44■□□□□ 0.54
Usp40Q8BWR4 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp40Q8BWR4 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Gm11793-201ENSMUST00000120433 981 ntBASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 AC154171.1-201ENSMUST00000224610 643 ntBASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms