Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Snord83b-201ENSMUST00000104546 94 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm5896-201ENSMUST00000189662 1024 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gm37042-201ENSMUST00000193816 581 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gm43133-201ENSMUST00000197472 463 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm6013-201ENSMUST00000212264 699 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC17.43■□□□□ 0.38
Trim28Q62318 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm18244-201ENSMUST00000219747 1566 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Trim28Q62318 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC17.43■□□□□ 0.38
Trim28Q62318 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim28Q62318 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim28Q62318 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim28Q62318 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim28Q62318 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim28Q62318 Gm12329-201ENSMUST00000120829 1007 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim28Q62318 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim28Q62318 Gm38158-201ENSMUST00000194617 339 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 AC159896.2-201ENSMUST00000214753 269 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 AC154319.1-201ENSMUST00000216330 312 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 Gm32025-201ENSMUST00000217960 307 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 Gm19163-201ENSMUST00000223313 780 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 AL589735.1-201ENSMUST00000224353 270 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 AC154462.2-201ENSMUST00000227519 370 ntBASIC17.42■□□□□ 0.38
Trim28Q62318 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim28Q62318 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim28Q62318 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim28Q62318 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trim28Q62318 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Mir1247-201ENSMUST00000116706 82 ntBASIC17.41■□□□□ 0.38
Trim28Q62318 Gm11793-201ENSMUST00000120433 981 ntBASIC17.41■□□□□ 0.38
Trim28Q62318 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Gm4768-201ENSMUST00000206199 686 ntBASIC17.41■□□□□ 0.38
Trim28Q62318 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC17.41■□□□□ 0.38
Trim28Q62318 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
Trim28Q62318 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Gm42769-201ENSMUST00000198576 1659 ntBASIC17.41■□□□□ 0.38
Trim28Q62318 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim28Q62318 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim28Q62318 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim28Q62318 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms