Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm14494-201ENSMUST00000118786 435 ntBASIC12.91□□□□□ -0.34
Nr1h4Q60641 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.91□□□□□ -0.34
Nr1h4Q60641 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nr1h4Q60641 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gm4913-201ENSMUST00000117075 1290 ntBASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gm18206-201ENSMUST00000207027 926 ntBASIC12.9□□□□□ -0.34
Nr1h4Q60641 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.9□□□□□ -0.34
Nr1h4Q60641 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Mir497b-201ENSMUST00000093601 125 ntBASIC12.9□□□□□ -0.34
Nr1h4Q60641 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Nr1h4Q60641 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Nr1h4Q60641 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Nr1h4Q60641 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Nr1h4Q60641 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Nr1h4Q60641 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
Nr1h4Q60641 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm18766-201ENSMUST00000189811 808 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm15500-202ENSMUST00000071641 1019 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm13332-201ENSMUST00000120451 1398 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.89□□□□□ -0.35
Nr1h4Q60641 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms