Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Gm5425-201ENSMUST00000214125 459 ntBASIC15.95■□□□□ 0.14
Limch1Q3UH68 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Limch1Q3UH68 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Gm13829-201ENSMUST00000119600 138 ntBASIC15.94■□□□□ 0.14
Limch1Q3UH68 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Gm24420-201ENSMUST00000176676 59 ntBASIC15.94■□□□□ 0.14
Limch1Q3UH68 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.94■□□□□ 0.14
Limch1Q3UH68 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.93■□□□□ 0.14
Limch1Q3UH68 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gm18062-201ENSMUST00000208020 547 ntBASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gm18055-201ENSMUST00000208254 547 ntBASIC15.93■□□□□ 0.14
Limch1Q3UH68 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Limch1Q3UH68 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Gm15806-201ENSMUST00000120696 955 ntBASIC15.92■□□□□ 0.14
Limch1Q3UH68 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.92■□□□□ 0.14
Limch1Q3UH68 AC131997.1-201ENSMUST00000228611 1229 ntBASIC15.92■□□□□ 0.14
Limch1Q3UH68 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Limch1Q3UH68 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms