Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf40Q3U319 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.1□□□□□ -0.15
Rnf40Q3U319 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Rpa3-201ENSMUST00000012627 670 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm4899-201ENSMUST00000178708 719 ntBASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm20822-202ENSMUST00000188422 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm20828-202ENSMUST00000190516 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.1□□□□□ -0.15
Rnf40Q3U319 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.1□□□□□ -0.15
Rnf40Q3U319 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf40Q3U319 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm15074-201ENSMUST00000117603 936 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm11764-201ENSMUST00000120221 623 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm27704-201ENSMUST00000185094 107 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Gm19395-201ENSMUST00000219618 646 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 AC132881.2-201ENSMUST00000225474 709 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.09□□□□□ -0.15
Rnf40Q3U319 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf40Q3U319 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf40Q3U319 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf40Q3U319 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Gm20854-201ENSMUST00000178889 1002 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Rnf40Q3U319 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms