Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Gm43721-201ENSMUST00000199677 2313 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Lire1P11260 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.91□□□□□ -0.34
Lire1P11260 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.9□□□□□ -0.34
Lire1P11260 Gm43438-201ENSMUST00000198133 379 ntBASIC12.9□□□□□ -0.34
Lire1P11260 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.9□□□□□ -0.34
Lire1P11260 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Gm2423-201ENSMUST00000074863 733 ntBASIC12.9□□□□□ -0.34
Lire1P11260 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.9□□□□□ -0.34
Lire1P11260 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Lire1P11260 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lire1P11260 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Lire1P11260 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.35
Lire1P11260 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Lire1P11260 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.89□□□□□ -0.35
Lire1P11260 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Lire1P11260 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Lire1P11260 Trav13-3-201ENSMUST00000117226 336 ntBASIC12.89□□□□□ -0.35
Lire1P11260 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.89□□□□□ -0.35
Lire1P11260 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.89□□□□□ -0.35
Lire1P11260 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.89□□□□□ -0.35
Lire1P11260 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lire1P11260 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Lire1P11260 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lire1P11260 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lire1P11260 Syt7-204ENSMUST00000223586 1344 ntBASIC12.88□□□□□ -0.35
Lire1P11260 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lire1P11260 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.88□□□□□ -0.35
Lire1P11260 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Lire1P11260 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lire1P11260 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lire1P11260 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms