Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Col1a1P11087 B9d1os-201ENSMUST00000137010 674 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Gm17208-201ENSMUST00000168388 535 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Col1a1P11087 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC15.64■□□□□ 0.09
Col1a1P11087 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Gm14263-201ENSMUST00000117955 746 ntBASIC15.64■□□□□ 0.09
Col1a1P11087 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.64■□□□□ 0.09
Col1a1P11087 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC15.64■□□□□ 0.09
Col1a1P11087 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC15.64■□□□□ 0.09
Col1a1P11087 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col1a1P11087 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Gm11531-201ENSMUST00000117614 555 ntBASIC15.63■□□□□ 0.09
Col1a1P11087 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC15.63■□□□□ 0.09
Col1a1P11087 Gm13570-201ENSMUST00000140763 309 ntBASIC15.63■□□□□ 0.09
Col1a1P11087 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
Col1a1P11087 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.63■□□□□ 0.09
Col1a1P11087 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC15.63■□□□□ 0.09
Col1a1P11087 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC15.63■□□□□ 0.09
Col1a1P11087 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.63■□□□□ 0.09
Col1a1P11087 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Col1a1P11087 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col1a1P11087 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC15.63■□□□□ 0.09
Col1a1P11087 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC15.62■□□□□ 0.09
Col1a1P11087 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col1a1P11087 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm14277-201ENSMUST00000121195 360 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm44967-201ENSMUST00000207047 631 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC15.62■□□□□ 0.09
Col1a1P11087 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms