Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.96■□□□□ 0.14
Col3a1P08121 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.95■□□□□ 0.14
Col3a1P08121 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.95■□□□□ 0.14
Col3a1P08121 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC15.95■□□□□ 0.14
Col3a1P08121 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Col3a1P08121 Gm12539-201ENSMUST00000121549 1098 ntBASIC15.95■□□□□ 0.14
Col3a1P08121 Gm26185-201ENSMUST00000157692 266 ntBASIC15.95■□□□□ 0.14
Col3a1P08121 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col3a1P08121 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
Col3a1P08121 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.94■□□□□ 0.14
Col3a1P08121 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Gm3756-201ENSMUST00000169182 1355 ntBASIC15.94■□□□□ 0.14
Col3a1P08121 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.94■□□□□ 0.14
Col3a1P08121 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Gm18935-201ENSMUST00000212692 664 ntBASIC15.94■□□□□ 0.14
Col3a1P08121 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col3a1P08121 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Col3a1P08121 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col3a1P08121 Gm13342-201ENSMUST00000121055 207 ntBASIC15.93■□□□□ 0.14
Col3a1P08121 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.93■□□□□ 0.14
Col3a1P08121 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.93■□□□□ 0.14
Col3a1P08121 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col3a1P08121 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.93■□□□□ 0.14
Col3a1P08121 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col3a1P08121 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Col3a1P08121 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Gm22323-201ENSMUST00000103832 109 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
Col3a1P08121 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
Col3a1P08121 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC15.92■□□□□ 0.14
Col3a1P08121 Rn7s1-201ENSMUST00000174924 300 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Rn7s2-201ENSMUST00000175032 300 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Gm26461-201ENSMUST00000175064 290 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Gm7895-201ENSMUST00000187459 1173 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Gm38341-201ENSMUST00000195357 515 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC15.92■□□□□ 0.14
Col3a1P08121 Gm7619-201ENSMUST00000210649 1282 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.92■□□□□ 0.14
Col3a1P08121 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.92■□□□□ 0.14
Col3a1P08121 n-R5s77-201ENSMUST00000083757 119 ntBASIC15.92■□□□□ 0.14
Col3a1P08121 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Col3a1P08121 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col3a1P08121 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms