Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm13036-201ENSMUST00000117799 748 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm25925-201ENSMUST00000158314 306 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm27459-201ENSMUST00000184860 107 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm42670-201ENSMUST00000201816 1292 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm34391-201ENSMUST00000203706 907 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Rps4l-201ENSMUST00000071745 943 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gm45242-201ENSMUST00000210666 2129 ntBASIC11.18□□□□□ -0.62
Hmgb3O54879 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hmgb3O54879 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hmgb3O54879 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.17□□□□□ -0.62
Hmgb3O54879 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Gm7899-201ENSMUST00000192935 1897 ntBASIC11.17□□□□□ -0.62
Hmgb3O54879 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Gm11452-201ENSMUST00000122376 690 ntBASIC11.17□□□□□ -0.62
Hmgb3O54879 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC11.17□□□□□ -0.62
Hmgb3O54879 AC131690.1-201ENSMUST00000218406 374 ntBASIC11.17□□□□□ -0.62
Hmgb3O54879 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Hmgb3O54879 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms