Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Gm43575-201ENSMUST00000196420 516 ntBASIC13.41□□□□□ -0.26
Lima1Q9ERG0 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.41□□□□□ -0.26
Lima1Q9ERG0 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.41□□□□□ -0.26
Lima1Q9ERG0 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 BC001981-202ENSMUST00000191393 1545 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm5566-201ENSMUST00000116118 459 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm15957-201ENSMUST00000118893 974 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm24158-201ENSMUST00000175263 71 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 AA619741-201ENSMUST00000195095 646 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm5312-201ENSMUST00000203728 547 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm44608-201ENSMUST00000206827 855 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lima1Q9ERG0 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
Lima1Q9ERG0 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
Lima1Q9ERG0 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gm27631-201ENSMUST00000184163 466 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 AC121598.1-201ENSMUST00000228224 1019 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gm8396-201ENSMUST00000057361 823 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms