Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gm12138-201ENSMUST00000122180 951 ntBASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gm9908-201ENSMUST00000211534 448 ntBASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Gm18041-201ENSMUST00000218210 618 ntBASIC15.21■□□□□ 0.03
Smc1aQ9CU62 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.21■□□□□ 0.03
Smc1aQ9CU62 AC117194.1-201ENSMUST00000224847 3002 ntBASIC15.21■□□□□ 0.02
Smc1aQ9CU62 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Smc1aQ9CU62 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Smc1aQ9CU62 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Smc1aQ9CU62 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.02
Smc1aQ9CU62 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Gm6912-201ENSMUST00000117218 544 ntBASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Olfr286-202ENSMUST00000205305 969 ntBASIC15.2■□□□□ 0.02
Smc1aQ9CU62 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Mir125a-201ENSMUST00000083545 68 ntBASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Smc1aQ9CU62 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm28760-201ENSMUST00000185995 736 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm37230-201ENSMUST00000194491 818 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Gm9797-201ENSMUST00000052902 613 ntBASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Smc1aQ9CU62 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Smc1aQ9CU62 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Smc1aQ9CU62 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC15.18■□□□□ 0.02
Smc1aQ9CU62 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Smc1aQ9CU62 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms