Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Gm38197-201ENSMUST00000192320 2122 ntBASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Brf1Q8CFK2 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm7899-201ENSMUST00000192935 1897 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 AC156560.2-201ENSMUST00000221232 264 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 AC154595.3-201ENSMUST00000224579 384 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 AC238811.3-201ENSMUST00000225422 709 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Brf1Q8CFK2 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Mir6392-201ENSMUST00000184924 108 ntBASIC16.35■□□□□ 0.21
Brf1Q8CFK2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gm7558-201ENSMUST00000193221 1165 ntBASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gtpbp10-211ENSMUST00000198799 648 ntBASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC16.35■□□□□ 0.21
Brf1Q8CFK2 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Brf1Q8CFK2 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms