Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Gm43125-201ENSMUST00000201724 730 ntBASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28aQ8CEI3 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Mir6990-201ENSMUST00000183724 91 ntBASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 AC133598.3-202ENSMUST00000224219 531 ntBASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Syt7-205ENSMUST00000224135 1557 ntBASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28aQ8CEI3 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm24543-201ENSMUST00000103867 82 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm15460-201ENSMUST00000118147 391 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm12428-201ENSMUST00000119844 727 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28aQ8CEI3 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms