Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp40Q8BWR4 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm45605-201ENSMUST00000210265 4269 ntBASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 AC154276.1-201ENSMUST00000228874 1299 ntBASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm43273-201ENSMUST00000199649 2594 ntBASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm14608-201ENSMUST00000120030 1553 ntBASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Usp40Q8BWR4 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Gm5850-201ENSMUST00000192923 1206 ntBASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Usp40Q8BWR4 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm8801-201ENSMUST00000173255 1064 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm6222-202ENSMUST00000182143 629 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm27501-201ENSMUST00000183599 107 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 AC122305.4-201ENSMUST00000216159 1206 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 AC140406.1-201ENSMUST00000226481 465 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 AC134335.2-201ENSMUST00000227660 440 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm43423-201ENSMUST00000198390 2094 ntBASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Usp40Q8BWR4 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Gm2231-201ENSMUST00000125661 612 ntBASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Gm27516-201ENSMUST00000184237 98 ntBASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp40Q8BWR4 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms